Target audience: Beginner
Estimated reading time: 5'
Newsletter: Geometric Learning in Python
Table of contents
What you will learn: How to implement and assess different techniques for reducing memory consumption on an MPS device.
Notes:
- Environments: Python 3.12, Matplotlib 3.9, PyTorch 2.4.1
- Source code is available at github.com/patnicolas/geometriclearning/dl/training
- To enhance the readability of the algorithm implementations, we have omitted non-essential code elements like error checking, comments, exceptions, validation of class and method arguments, scoping qualifiers, and import statement.
Metal Performance Shaders (MPS)
The MPS (Metal Performance Shaders) device on macOS enables high-performance GPU acceleration for machine learning tasks, particularly within the PyTorch framework. By leveraging Apple's Metal framework, MPS allows developers to execute computationally intensive operations directly on the GPU [ref 1].
Key Characteristics of the MPS Device:
- Integration with PyTorch: PyTorch allows tensors and models to be allocated and executed on the MPS device. This integration facilitates seamless GPU acceleration for training and inference tasks on macOS.
- Unified Memory Architecture: Apple's unified memory architecture provides the GPU with direct access to the entire memory store.
- Device Compatibility: The MPS backend is compatible with Mac computers equipped with Apple silicon (M1, M2, M3) or AMD GPUs
- Performance Optimization: MPS optimizes compute performance with kernels fine-tuned for the unique characteristics of each Metal GPU family.
Memory optimization techniques
This list of recommendations may not be comprehensive, and some readers might have experimented with other techniques. While a subset of these techniques is implemented and evaluated using PyTorch [ref 2], similar implementations are available in other deep learning frameworks like TensorFlow.
1. Reducing batch size
Batch size directly impacts memory usage, so reducing it is often the most effective way to avoid memory overflow.2. Using mixed precision float values
The MPS backend on macOS doesn’t support
The MPS backend on macOS doesn’t support
torch.cuda.amp.GradScaler, but you can still implement mixed-precision training manually by converting input data to float16 while keeping model weights in float32.3. Checkpointing gradients
Gradient checkpointing (a.k.a. "activation checkpointing") saves memory by storing only a few intermediate activations and recomputing them during backpropagation (
Gradient checkpointing (a.k.a. "activation checkpointing") saves memory by storing only a few intermediate activations and recomputing them during backpropagation (
torch.utils.checkpoint)4. Limiting the number of layers
Use fewer layers or smaller layer sizes to reduce memory requirements (i.e. num filters for CNNs, number of units for fully connected layers)
Use fewer layers or smaller layer sizes to reduce memory requirements (i.e. num filters for CNNs, number of units for fully connected layers)
9. Reducing memory reserved by the MPS Backend
You can adjust the
You can adjust the
PYTORCH_MPS_HIGH_WATERMARK_RATIO environment variable to control the amount of memory that the MPS backend can use.10. Sampling training data set
Reduce the size of the training set, at least as initial step
11. Monitoring memory consumption
Implementation
Our straightforward implementation uses a class,
ExecConfig, which encapsulates all the recommendations as variables and methods.Setup
We implement 6 of the recommendations described in the previous paragraph, by defining a pair of
- variable enabling the featured recommendation
- method implementing the execution of the recommendation.
class ExecConfig(object):
def __init__(self,
empty_cache: bool,
mix_precision: bool,
subset_size: int,
monitor_memory: bool,
grad_accu_steps: int = 1,
device_config: AnyStr = None,
pin_mem: bool = True):
self.empty_cache = empty_cache
self.mix_precision = mix_precision
self.subset_size = subset_size
self.grad_accu_steps = grad_accu_steps
self.device_config = device_config
self.pin_mem = pin_mem
self.monitor_memory = monitor_memory
# Recommendation 11 def apply_monitor_memory(self) -> None:
# Recommendation 8 def apply_grad_accu_steps(self, idx: int, optimizer: Optimizer) -> None:
# Recommendation 2
def apply_mix_precision(self, x: torch.Tensor) -> torch.Tensor:
# Recommendation 5 def apply_empty_cache(self) -> None:
# Recommendation 10def apply_sampling(self,train_dataset: Dataset,test_dataset: Dataset) -> (Dataset, Dataset):# Recommendation 7def apply_optimize_loaders(self, batch_size: int, train_dataset: Dataset, test_dataset: Dataset) -> (DataLoader, DataLoader):
Now let's dive into the implementation of these recommendations.
Recommendations
Monitoring memory consumption [11]
If MPS memory is enabled and the specified device is set to 'mps,' we calculate the total memory available on the MPS device, as well as the memory allocated for training and its usage.
def apply_monitor_memory(self) -> None:if self.monitor_memory and self.device_config == 'mps': allocated_mem = torch.mps.current_allocated_memory() total_mem = torch.mps.driver_allocated_memory() usage = 100.0*allocated_mem/total_mem print(f'\nAllocated MPS: {format(allocated_mem, ",")}' f'\nTotal MPS: {format(total_mem, ",")}' f'\nUsage MPS: {usage:.2f}' )
Accumulating gradients [8]
Gradient computation and subsequent resetting to zero are performed either for each batch (grad_accu_steps = 1) or after every
grad_accu_steps batches.def apply_grad_accu_steps(self, idx: int, optimizer: Optimizer) -> None: if self.grad_accu_steps == 1 or (idx+1) % self.grad_accu_steps == 0: optimizer.step() optimizer.zero_grad()
Using mixed precision [2]
There are various strategies for incorporating
float16 in the forward and backward passes of the training process. For simplicity, we choose to convert input data from float32 to float16 using the PyTorch half() method.1 2 | def apply_mix_precision(self, x: torch.Tensor) -> torch.Tensor:
return x.half() if self.mix_precision else x
|
Emptying cache [5]
The method torch method, mps.empty_cache() is invoked at the end of each batch, if the recommendation/feature empty_cache is enabled (True).
1
2
3 | def apply_empty_cache(self) -> None:
if self.empty_cache:
torch.mps.empty_cache()
|
Sampling training data [10]
Reducing the size of the training set is a key strategy for minimizing memory consumption. This approach utilizes the
Subset class from the PyTorch library. A key challenge is re-indexing the training data points by setting indices=range(subset_size).def apply_sampling(self,
train_dataset: Dataset,
test_dataset: Dataset) -> (Dataset, Dataset):
if self.subset_size > 0:
from torch.utils.data import Subset
# Rescale the size of training and test data
test_subset_size = int(float(self.subset_size * len(test_dataset)) / len(train_dataset))
train_subset_size = self.subset_size - test_subset_size
# Re-index the subset of training and test data set
train_dataset = Subset(train_dataset, indices=range(train_subset_size))
test_dataset = Subset(test_dataset, indices=range(test_subset_size))
return train_dataset, test_dataset
Optimizing data Loading [7]
The final recommendation we assess involves pinning memory to optimize the transfer of training data points from the CPU to the GPU.
def apply_optimize_loaders(self,
batch_size: int,
train_dataset: Dataset,
test_dataset: Dataset) -> (DataLoader, DataLoader):
train_loader = DataLoader(
dataset=train_dataset,
batch_size=batch_size,
pin_memory=self.pin_mem, # Recommendation #7
shuffle=True)
test_loader = DataLoader(
dataset=test_dataset,
batch_size=batch_size,
pin_memory=self.pin_mem,
shuffle=False)
return train_loader, test_loader
Evaluation
MNIST is a database of handwritten digits with of 60,000 training examples and 10,000 examples [ref 3]
Caltech101 is a well-known dataset of 9146 images from 102 categories from airplanes, animal to furniture [ref 4]
The next step involves incorporating the six recommendations into the processes of loading and training the MNIST and Caltech101 datasets. To achieve this, we encapsulate the data loading and model training within a class called NeuraNet. For simplicity, the implementation is streamlined to include only the essential attributes required for training and validating the model:
- model: A convolutional neural network.
- metrics: A dictionary containing metrics such as precision and recall.
- exec_config: The training execution configuration, as defined in the previous section.
class NeuralNet(object):
def __init__(self,
model: nn.Module,
metrics: Dict[AnyStr, Metric],
exec_config: ExecConfig) -> None:self.model = model.to(self.target_device) self.exec_config = exec_config self.metrics = metrics
We apply the sampling of training data (subset) to the data loaded from local files. Then
we enabled memory pinning to optimize the data loaders.
def load_dataset(self, train_dataset : Dataset, test_dataset: Dataset) -> (DataLoader, DataLoader):
# Sample training data - Recommendation #10 train_dataset, test_dataset = exec_config.apply_sampling(train_dataset, test_dataset) # Optimize data loaders - Recommendation #7 train_loader, test_loader = exec_config.apply_optimizing_loaders( train_dataset, test_dataset)
return train_loader, test_loaderThe following code snippet illustrates the standard training approach, which involves training on a subset or the entire dataset, followed by validation and the calculation of key performance metrics. Non essential ancillary and debugging statement are omitted.
Additionally, memory usage on the MPS device (recommendation 11) is measured at the end of each epoch.
def train(self,
train_loader: DataLoader,
test_loader: DataLoader) -> None:
torch.manual_seed(42)
initialize_weight(list(self.model.modules()))
# Train and evaluation process
for epoch in tqdm(range(self.epochs)):
# Training
train_loss = self.__train(epoch, train_loader)
# Evaluation and computation of metrics (F1, ...)
eval_metrics = self.__eval(epoch, test_loader)
# Initialize monitoring of memory on mps device self.exec_config.apply_monitor_memory() # Recommendation #11
The private method
__train performs training on the dataset for each epoch. For every batch, the cache is cleared, and gradient values are accumulated.def __train(self, epoch: int, train_loader: DataLoader) -> float:
total_loss = 0.0
# Initialize the gradient for the optimizer
loss_function = self.loss_function
optimizer = self.optimizer(self.model)
self.model.to(torch_device)
for idx, (features, labels) in enumerate(train_loader):
model.train()
features = features.to(torch_device)
labels = labels.to(torch_device)
predicted = model(features) # Call forward - prediction
raw_loss = loss_function(predicted, labels)
# Set back propagation
raw_loss.backward(retain_graph=True)
total_loss += raw_loss.data
# MPS memory management ---------------------
self.exec_config.apply_empty_cache() # 3 Cache management
self.exec_config.apply_grad_accu_steps(idx, optimizer) # 4 Aggregation grad steps
return total_loss / len(train_loader)
We conduct a binary test [ON/OFF] for each recommendation and track its impact on memory availability for the MPS device:
- Using 20% of the dataset vs. the entire dataset
- Enabling vs. disabling memory pinning
- Using mixed precision (
float16) for training data vs. full precision - Enabling vs. disabling cache clearing between batches
- Accumulating gradients over multiple batches vs. single-batch accumulation
Fig. 1 Evaluation of memory reduction on MPS device for each recommendation.
-------------
Patrick Nicolas has over 25 years of experience in software and data engineering, architecture design and end-to-end deployment and support with extensive knowledge in machine learning.
He has been director of data engineering at Aideo Technologies since 2017 and he is the author of "Scala for Machine Learning", Packt Publishing ISBN 978-1-78712-238-3 and Geometric Learning in Python Newsletter on LinkedIn.
Patrick Nicolas has over 25 years of experience in software and data engineering, architecture design and end-to-end deployment and support with extensive knowledge in machine learning.
He has been director of data engineering at Aideo Technologies since 2017 and he is the author of "Scala for Machine Learning", Packt Publishing ISBN 978-1-78712-238-3 and Geometric Learning in Python Newsletter on LinkedIn.
Appendix
Architecture of the convolutional neural network used to evaluate the recommended memory reduction policies.
- Conv2d(3, 64, kernel_size=(3, 3), stride=(1, 1), bias=False)
- BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=Tru e)
- ReLU()
- MaxPool2d(kernel_size=2, stride=1, padding=0, dilation=1, ceil_mode=False)
- Conv2d(64, 128, kernel_size=(3, 3), stride=(1, 1), bias=False)
- BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)
- MaxPool2d(kernel_size=2, stride=1, padding=0, dilation=1, ceil_mode=False)
- Conv2d(128, 256, kernel_size=(3, 3), stride=(1, 1), bias=False)
- BatchNorm2d(256,eps=1e-05,momentum=0.1,affine=True, track_running_stats=True)
- MaxPool2d(kernel_size=2, stride=1, padding=0, dilation=1, ceil_mode=False)
- Conv2d(256, 512, kernel_size=(3, 3), stride=(1, 1), bias=False)
- BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)
- MaxPool2d(kernel_size=2, stride=1, padding=0, dilation=1, ceil_mode=False)
- Flatten(start_dim=1, end_dim=-1)
- Linear(in_features=3612672, out_features=512, bias=False)
- Linear(in_features=512, out_features=101, bias=False)
- Softmax(dim=1)
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